PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767409.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 270aa MW: 29993.8 Da PI: 9.3546

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.3	2.9e-29	114	170	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ e+k+ ksrkpylheSRh+hA+rR+R gGrF XP_009767409.1 114 EEPMYVNAKQYHGILRRRQLRAKAVLEQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 170 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.3E-33	112	173	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.792	113	173	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-26	115	170	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-22	116	138	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-22	147	170	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGTGTYGEVG RTIQQRSGTH IPQILDPPLL GDSDCKREGK HVEFMPPIMG ENLKAANQFE 60 LMAPSIAFKS YPYSEVPQYS GGNVAAACGE SLVHQNIERS VHNGRMILPI EVKEEPMYVN 120 AKQYHGILRR RQLRAKAVLE QKVVKSRKPY LHESRHRHAM RRARDGGGRF LNTKKKIQLP 180 ANNNINTTTP SSKGKGCAAS EVSSMDSDFS QNYLLNSGHI GSSNATSVEG FQFQGIHNTD 240 NPQLGCHYQW NLNDNHCNCM QSGASNLQPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	114	176	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	163	RHRHAMRRAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767409.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	M1AEI5	1e-106	M1AEI5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021053	1e-106	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13392	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	2e-29	nuclear factor Y, subunit A1