![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009767409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 270aa MW: 29993.8 Da PI: 9.3546 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.3 | 2.9e-29 | 114 | 170 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ e+k+ ksrkpylheSRh+hA+rR+R gGrF XP_009767409.1 114 EEPMYVNAKQYHGILRRRQLRAKAVLEQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 170 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.3E-33 | 112 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.792 | 113 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-26 | 115 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.1E-22 | 116 | 138 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.1E-22 | 147 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MGTGTYGEVG RTIQQRSGTH IPQILDPPLL GDSDCKREGK HVEFMPPIMG ENLKAANQFE 60 LMAPSIAFKS YPYSEVPQYS GGNVAAACGE SLVHQNIERS VHNGRMILPI EVKEEPMYVN 120 AKQYHGILRR RQLRAKAVLE QKVVKSRKPY LHESRHRHAM RRARDGGGRF LNTKKKIQLP 180 ANNNINTTTP SSKGKGCAAS EVSSMDSDFS QNYLLNSGHI GSSNATSVEG FQFQGIHNTD 240 NPQLGCHYQW NLNDNHCNCM QSGASNLQPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-20 | 114 | 176 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 154 | 163 | RHRHAMRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767409.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
TrEMBL | M1AEI5 | 1e-106 | M1AEI5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021053 | 1e-106 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13392 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-29 | nuclear factor Y, subunit A1 |